Preprints
Hartl, B., Risi, S., and Levin, M. (2024), Evolutionary Implications of Multi-Scale Intelligence, OSF Preprints, doi:10.31219/osf.io/sp9kf
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Shreesha, L., and Levin, M. (2024), Stress Sharing as Cognitive Glue for Collective Intelligences: a computational model of stress as a coordinator for morphogenesis, OSF Preprints, doi:10.31219/osf.io/9y8ku
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Levin, M. (2024), Self-improvising Memories: a perspective on memories as agential, dynamically-reinterpreting cognitive glue, OSF Preprints, doi:10.31219/osf.io/4b2wj
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Tissot, T., Levin, M., Buckley, C., and Watson, R. (2024), An ability to respond begins with inner alignment: How phase synchronisation effects transitions to higher levels of agency, bioRxiv, doi:10.1101/2024.02.16.580248
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Kofman, K., and Levin, M. (2024), Bioelectric Pharmacology of Cancer: A Meta-Analysis of Ion Channel Drugs Affecting the Cancer Phenotype, OSF Preprints, doi:10.31219/osf.io/qkuvf
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Zhang, T., Goldstein, A., and Levin, M. (2023), Classical Sorting Algorithms as a Model of Morphogenesis: self-sorting arrays reveal unexpected competencies in a minimal model of basal intelligence, OSF Preprints, doi:10.31219/osf.io/e5d4u
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Etcheverry, M., Moulin-Frier, C., Oudeyer, P.-Y., and Levin, M. (2023), AI-driven Automated Discovery Tools Reveal Diverse Behavioral Competencies of Biological Networks, OSF Preprints, doi:10.31219/osf.io/s6thq
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Li, H., Yang, H.-Y., Asefifeyzabadi, N., Baniya, P., Medina Lopez, A., Gallegos, A., Zhu, K., Hsieh, H.-C., Nguyen, T., Hernandez, C., Zlobina, K., Recendez, C., Tebyani, M., Carrión, H., Selberg, J., Luo, L., Alhamo, M. A., Soulika, A. M., Levin, M., Norouzi, N., Gomez, M., Zhao, M., Teodorescu, M., Isseroff, R. R., and Rolandi, M. (2023), Programmable delivery of fluoxetine via wearable bioelectronics for wound healing in vivo, bioRxiv, doi:10.1101/2023.10.10.561754
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Sacco, F., Sakthivadivel, D., and Levin, M. (2023), Requirements for self organization: What do you need to have a structure emerge spontaneously?, Github, doi:10.5281/zenodo.8416764
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O’Brien, T., Stremmel, J., Pio-Lopez, L., McMillen, P., Rasmussen-Ivey, C., and Levin, M. (2023), Machine Learning for Hypothesis Generation in Biology and Medicine: Exploring the latent space of neuroscience and developmental bioelectricity, OSF Preprints, doi:10.31219/osf.io/269e5
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Etcheverry, M., Levin, M., Moulin-Frier, C., and Oudeyer, P.-Y. (2023), SBMLtoODEjax: efficient simulation and optimization of ODE SBML models in JAX, arXiv, doi:10.48550/arXiv.2307.08452
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Tung, A., Sperry, M., Clawson, W., Pavuluri, A., Bulatao, S., Yue, M., Flores, R. M., Pai, V. McMillen, P., Kuchling, F., and Levin, M. (2023), Embryos Assist Each Other’s Morphogenesis: calcium and ATP signaling mechanisms in collective resistance to teratogens, OSF Preprints, doi:10.31219/osf.io/ps987
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Pio-Lopez, L., and Levin, M. (2023), Aging as a morphostasis defect: a developmental bioelectricity perspective, OSF Preprints, doi:10.31219/osf.io/wkhx4
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Ciaunica, A., Levin, M., Rosas, F., and Friston, K. (2023), Nested Selves: Self-Organisation and Shared Markov Blankets in Prenatal Development in Humans, PsyArXiv, doi:10.31234/osf.io/g8q5d
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Masuelli, S., Real, S., McMillen, P., Oudin, M., Levin, M., and Roqué, M. (2023), The Yin and Yang of Breast Cancer: Ion Channels as Determinants of Left-Right Functional Differences, Preprints.org, 2023051160, doi:10.20944/preprints202305.1160.v1
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Fields, C., Fabrocini, F., Friston, K., Glazebrook, J. F., Hazan, H., Levin, M. and Marcianò, A. (2023), Control flow in active inference systems, arXiv, doi:10.48550/arXiv.2303.01514
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Levin, M. (2023), Darwin’s Agential Materials: evolutionary implications of multi-scale competency in developmental biology, OSF Preprints, doi:10.31219/osf.io/p23se
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Witkowski, O., Doctor, T., Solomonova, E., Duane, B., and Levin, M. (2023), Towards an Ethics of Autopoietic Technology: Stress, Care, and Intelligence, PsyArXiv, doi:10.31234/osf.io/pjrd2
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Sperry, M. M., Charrez, B., Fotowat, H., Gardner, E., Pilobello, K., Izadifar, Z., Lin, T., Kuelker, A., Kaki, S., Lewandowski, M., Lightbown, S., Martinez, R., Marquez, S., Sesay, A., Shcherbina, K., Takeda, T., Andrijauskaite, K., Cisneros, E., Lopez, R., Cano, I., Maxwell, Z., Veraza, R., Bunegin, L., Percival, T. J., Yracheta, J., Pena, J. J., Wood, D. M., Homas, Z. T., Hinshaw, C. J., Cox-Hinshaw, J., Parry, O. G., Sleeter, J. J., Weitzel, E., Levin, M., Super, M., Novak, R., and Ingber, D. E. (2023), Identification of a pharmaceutical biostasis inducer that slows metabolism in multiple vertebrates that do not hibernate, bioRxiv, doi:10.1101/2023.02.27.530270
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Manicka, S., Pai, V. P, and Levin, M. (2023), Information integration during bioelectric regulation of morphogenesis in the embryonic frog brain, bioRxiv, doi:10.1101/2023.01.08.523164
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Pio-Lopez, L., and Levin, M. (2022), Morphoceuticals: perspectives for discovery of drugs targeting anatomical control mechanisms in regenerative medicine, cancer, and aging, OSF Preprints, doi:10.31219/osf.io/7hxnp
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Bongard, J., and Levin, M. (2022), There’s Plenty of Room Right Here: Biological Systems as Evolved, Overloaded, Multi-scale Machines, arXiv, doi:10.48550/arXiv.2212.10675
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Pio-Lopez, L., Bischof, J., LaPalme, J. V., and Levin, M. (2022), The scaling of goals via homeostasis: an evolutionary simulation, experiment and analysis, arXiv, doi:10.48550/arXiv.2211.08522
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Mathews, J., Chang, J., Devlin, L., and Levin, M. (2022), Cellular Signaling Pathways as Plastic, Proto-cognitive Systems: Implications for Biomedicine, OSF Preprints, doi:10.31219/osf.io/c6n9r
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Grodstein, J., and Levin, M. (2022), Closing the Loop on Morphogenesis: A Mathematical Model of Morphogenesis by Closed-Loop Reaction-Diffusion, arXiv, doi:10.48550/arXiv.2211.01313
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Hazan, H., and Levin, M. (2022), Exploring The Behavior of Bioelectric Circuits using Evolution Heuristic Search, bioRxiv, doi:10.1101/2022.10.23.513361
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Fields, C., and Levin, M. (2022), Regulative development as a model for origin of life and artificial life studies, PsyArXiv, doi:10.31234/osf.io/rdt7f
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Ciaunica, A., and Levin, M. (2022), The Brain is not Mental! Coupling Neuronal and Immune Cellular Processing in Human Organisms, PsyArXiv, doi:10.31234/osf.io/fgcy5
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Gumuskaya, G., Srivastava, P., Cooper, B. G., Lesser, H., Semegran, B., Garnier, S., and Levin, M. (2022), Motile Living Biobots Self-Construct from Adult Human Somatic Progenitor Seed Cells, bioRxiv, doi:10.1101/2022.08.04.502707
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Shreesha, L., and Levin, M. (2022), Competency of the Developmental Layer Alters Evolutionary Dynamics in an Artificial Embryogeny Model of Morphogenesis, arXiv, doi:10.48550/arXiv.2207.14729
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Manicka, S., Johnson, K., Levin, M., and Murrugarra, D. (2022), The nonlinearity of regulation in biological networks, bioRxiv, doi:10.1101/2021.12.22.473903
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McMillen, P., and Levin, M. (2022), Information Theory as an experimental tool for integrating disparate biophysical signaling modules, Preprints.org, doi:10.20944/preprints202207.0376.v1
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Pio-Lopez, L., Kuchling, F., Tung, A., Pezzulo, G., and Levin, M. (2022), Active Inference, Morphogenesis, and Computational Psychiatry, PsyArXiv, doi:10.31234/osf.io/4gp6c
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Pai, V. P., Cooper, B., and Levin, M. (2022), Screening biophysical sensors and actuators that influence wound healing in human induced pluripotent stem cell-derived neurons, Preprints.org, 2022070083, doi:10.20944/preprints202207.0083.v1
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Blackiston, D., Kriegman, S., Bongard, J., and Levin, M. (2022), Biological Robots: Perspectives on an Emerging Interdisciplinary Field, arXiv, doi:10.48550/arXiv.2207.00880
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Davies, J., and Levin, M. (2022), Synthetic Morphology via Active and Agential Matter, OSF Preprints, doi:10.31219/osf.io/xrv8h
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Levin, M. (2022), Collective Intelligence of Morphogenesis as a Teleonomic Process, PsyArXiv, doi:10.31234/osf.io/hqc9b
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Fields, C., and Levin, M. (2022), Competency in Navigating Arbitrary Spaces: Intelligence as an Invariant for Analyzing Cognition in Diverse Embodiments, PsyArxiv, doi:10.31234/osf.io/87nzu
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Novak, R., Lin, T., Kaushal, S., Sperry, M., Vigneault, F., Gardner, E., Loomba, S., Shcherbina, K., Keshari, V. , Dinis, A., Vasan, A., Chandrasekhar, V., Takeda, T., Turner, J. R., Levin, M., and Ingber, D. E. (2022), Target-agnostic discovery of Rett Syndrome therapeutics by coupling computational network analysis and CRISPR-enabled in vivo disease modeling, bioRxiv, doi:10.1101/2022.03.20.485056doi
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Hazan, H., Caby, S., Earl, C., Siegelmann, H., and Levin, M. (2022),
Memory via Temporal Delays in weightless Spiking Neural Network,
arXiv, doi:10.48550/arXiv.2202.07132
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Fields, C., Glazebrook, J. F., and Levin, M. (2022), Neurons as hierarchies of quantum reference frames, arXiv, doi:10.48550/arXiv.2201.00921
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Doctor, T., Witkowski, O., Solomonova, E., Duane, B., and Levin, M. (2022),
Biology, Buddhism, and AI: Care as the Driver of Intelligence,
MindRxiv, 10 Mar. 2022
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Levin, M. (2021),
Technological Approach to Mind Everywhere (TAME): an experimentally-grounded framework for understanding diverse bodies and minds,
PsyArXiv, doi:10.31234/osf.io/t6e8p
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Sperry, M., Novak, R., Keshari, V., Dinis, A. L. M., Cartwright, M. J., Camacho, D. M., Pare, J-F, Super, M., Levin, M., and Ingber, D. E. (2021),
Enhancers of host immune tolerance to bacterial infection discovered using linked computational and experimental approaches,
bioRxiv, doi:10.1101/2021.09.30.462576
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Levin, S. P., and Levin, M. (2021), Physarum polycephalum: Establishing an Assay for Testing Decision-making Under Shifting Somatic Boundaries, bioRxiv, doi:10.1101/2021.10.17.464734
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Payne, S. K., Ram, P., Srinivasan, D. H., Le, T. T., Levin, M., and Oudin, M. J. (2021),
Potassium channel-driven bioelectric signaling regulates metastasis in triple-negative
breast cancer, bioRxiv, doi:10.1101/2021.04.06.438714
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Fields, C., and Levin, M. (2021),
Metabolic limits on classical information processing by biological cells,
arXiv, doi:10.48550/arXiv.2103.17061
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Kriegman, S., Nasab, A. M., Blackiston, D., Steele, H., Levin, M., Kramer-Bottiglio, R., and Bongard, R. (2021),
Scale invariant robot behavior with fractals,
arXiv, doi:10.48550/arXiv.2103.04876
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Bischof, J., LaPalme, J., Miller, K., Morokuma, J., Williams, K., Fields, C., and Levin, M. (2021),
Formation and Spontaneous Long-Term Repatterning of Headless Planarian Flatworms,
bioRxiv,
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Brodsky, M. (2020),
Turing-like patterns can arise from purely bioelectric mechanisms, bioRxiv,
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Pentagna, N., Soares dos Santos, F., Martins de Almeida, F., Abreu, J. G., Levin, M., and Carneiro, K. (2020), Epigenetic immune-modulation
by Histone Deacetylase Activity (HDAC) of tissue and organ regeneration in
Xenopus laevis, bioRxiv,
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Hazan, H., Levin, M. (2020), BindsNET – A Framework for Spiking Neuronal Simulation, Medium
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Hoel, E., Klein, B., Swain, A., Grebenow, R., Levin, M. (2020), Evolution leads to emergence:
An analysis of protein interactomes across the tree of life, bioRxiv,
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Murugan, N., Kaltman, D., Jin, H., Chien, M., Flores, R., Nguyen, C., Tuzoff, D., Minabutdinov, A., Kane, A., Novak, R., Ingber, D. (2020),
Mechanosensation Mediates Long-Range Spatial Decision-Making in an Aneural Organism,
bioRxiv,
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Kriegman, S., Nasab, A. M., Shah, D., Steele, H., Branin, G., Levin, M., Bongard, J., and Kramer-Bottiglio, R. (2020),
Scalable sim-to-real transfer of soft robot designs,
arXiv, doi:10.48550/arXiv.1911.10290
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Reinmets, K., Bischof, J., Taketa, E., Levin, M., and Fuchs, S. M. (2020),
S-adenosylhomocysteine hydrolase regulates anterior patterning in Dugesia japonica,
bioRxiv,
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Kriegman, S., Walker, S., Shah, D., Levin, M., Kramer-Bottiglio, R., and Bongard, J. (2019),
Automated shapeshifting for function recovery in damaged robots, arXiv,
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Manicka, S., and Levin, M. (2019),
Modeling somatic computation with non-neural bioelectric networks,
arXiv, doi:10.1038/s41598-019-54859-8
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Pezzulo, G., LaPalme, J., Durant, F., and Levin, M. (2019),
Bistability of Somatic Pattern Memories: Stochastic Outcomes in Bioelectric Circuits Underlying Regeneration, Preprints.org, 2019110348
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Leigh, N. D., Sessa, S., Dragalzew, A. C., Payzin-Dogru, D., Sousa, J. F.,
Aggouras, A., Johnson, K., Dunlap, G. S., Haas, B. J., Levin, M., Schneider, I., and Whited, J. L. (2019),
von Willebrand Factor D and EGF Domains is an evolutionarily conserved and required
feature of blastemas capable of multi-tissue appendage regeneration,
bioRxiv,
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Minh-Thai, T.N., Samarasinghe, S., and Levin, M. (2019),
A comprehensive conceptual and computational dynamics framework for Autonomous Regeneration Systems,
bioRxiv, doi:10.1101/820613
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Bischof, J., Day, M.E., Miller, K.A., LaPalme, J., and Levin, M. (2019),
Nervous System and Tissue Polarity Dynamically Adapt to New Morphologies in Planaria,
bioRxiv,
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Bonzanni, M., Payne, S. L., Adelfio, M., Kaplan, D. L.,
Levin, M., and Oudin, M. J. (2019), Defined
extracellular ionic solutions to study and manipulate the cellular
resting membrane potential, bioRxiv,
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Sullivan, K. G., Vandenberg, L. N., and Levin, M. (2018), Cellular Migration
May Exhibit Intrinsic Left-Right Asymmetries: A meta-analysis, bioRxiv,
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Ferenc, N. N., and Levin, M. (2017), Effects of Ivermectin exposure on regeneration of
D. dorotocephala planaria,
bioRxiv,
PDF
McDowell, G. S., Rajadurai, S., and Levin, M. (2016), From cytoskeletal dynamics
to organ asymmetry: a non-linear, regulative pathway underlies left-right patterning,
bioRxiv,
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